Three trade-offs deserve more attention than they usually get.
The first is nutrient gaps. Modeling work published in the BMJ Open by Zinn and colleagues found that low-carbohydrate, high-fat eating patterns can fall short of recommended intakes for fiber, several B vitamins, vitamin C, vitamin E, calcium, and magnesium unless they are built deliberately around nutrient-dense foods like non-starchy vegetables, nuts, seeds, and some dairy. The risk is not inherent to cutting carbs; it is a downstream effect of what gets cut and what does — or does not — take its place.
The second is gut health. Dietary fiber from whole grains, legumes, fruits, and vegetables is one of the most studied supports for a diverse, healthy gut microbiome. Educational materials from the Harvard T.H. Chan School of Public Health document how high-fiber patterns are associated with lower LDL cholesterol, lower heart disease risk, and a more diverse microbial community. Aggressive carb restriction often cuts fiber intake substantially, and if processed low-carb products fill the gap, the downstream effects on the gut and on systemic inflammation are unlikely to be neutral.
The third is what is sometimes called "dirty keto" — replacing carbs with bacon, butter, processed meats, and ultra-processed low-carb packaged products rather than with whole foods. Harvard faculty including Dr. Walter Willett have emphasized that carbohydrate quality matters more than carbohydrate quantity alone, and that the cardiometabolic profile of a plant-forward, unsaturated-fat-rich low-carb pattern differs meaningfully from one built on saturated fats and processed meats. A low-carb diet is not a single thing. The food choices inside it determine almost everything.
There is also a more personal trade-off worth naming: meal planning gets harder, eating out gets harder, and the social cost of being on a restrictive eating pattern can wear down even motivated people over time. For anyone with a personal or family history of disordered eating, removing an entire macronutrient group can be a meaningful trigger. If that pattern is part of your history, working with a qualified clinician rather than going it alone tends to be the safer path.